Πλοήγηση ανά Θέμα "Software"

Anatomy learning from prosected cadaveric specimens versus three-dimensional software: A comparative study of upper limb anatomy

Mitrousias V., Varitimidis S.E., Hantes M.E., Malizos K.N., Arvanitis D.L., Zibis A.H. (2018)

Introduction: Modern, three-dimensional (3D) anatomy software is a promising teaching method, though few studies examine its effectiveness on upper limb and musculoskeletal anatomy learning. The purpose of this study is ...

Application of Radiomics and Decision Support Systems for Breast MR Differential Diagnosis

Tsougos I., Vamvakas A., Kappas C., Fezoulidis I., Vassiou K. (2018)

Over the years, MR systems have evolved from imaging modalities to advanced computational systems producing a variety of numerical parameters that can be used for the noninvasive preoperative assessment of breast pathology. ...

Are computational applications the “crystal ball” in the IVF laboratory? The evolution from mathematics to artificial intelligence

Simopoulou M., Sfakianoudis K., Maziotis E., Antoniou N., Rapani A., Anifandis G., Bakas P., Bolaris S., Pantou A., Pantos K., Koutsilieris M. (2018)

Mathematics rules the world of science. Innovative technologies based on mathematics have paved the way for implementation of novel strategies in assisted reproduction. Ascertaining efficient embryo selection in order to ...

An automated blastomere identification method for the evaluation of day 2 embryos during IVF/ICSI treatments

Strouthopoulos C., Anifandis G. (2018)

Purpose Evaluation of human embryos is one of the most important challenges in vitro fertilization (IVF) programs. The morphology and the morphokinetic parameters of the early cleaving embryo are of critical clinical ...

Bone metastasis classification using whole body images from prostate cancer patients based on convolutional neural networks application

Papandrianos N., Papageorgiou E., Anagnostis A., Papageorgiou K. (2020)

Bone metastasis is one of the most frequent diseases in prostate cancer; scintigraphy imaging is particularly important for the clinical diagnosis of bone metastasis. Up to date, minimal research has been conducted regarding ...

BUFET: Boosting the unbiased miRNA functional enrichment analysis using bitsets

Zagganas K., Vergoulis T., Paraskevopoulou M.D., Vlachos I.S., Skiadopoulos S., Dalamagas T. (2017)

Background: A group of miRNAs can regulate a biological process by targeting genes involved in the process. The unbiased miRNA functional enrichment analysis is the most precise in silico approach to predict the biological ...

Cadherin and Wnt signaling pathways as key regulators in diabetic nephropathy

Tziastoudi M., Tsezou A., Stefanidis I. (2021)

Aim A recent meta-analysis of genome-wide linkage studies (GWLS) has identified multiple genetic regions suggestive of linkage with DN harboring hundreds of genes. Moving this number of genetic loci forward into biological ...

Computer-aided clinical image analysis for non-invasive assessment of tumor thickness in cutaneous melanoma

Papadakis M., Paschos A., Manios A., Lehmann P., Manios G., Zirngibl H. (2021)

Objective: Computerized clinical image analysis is shown to improve diagnostic accuracy for cutaneous melanoma but its effectiveness in preoperative assessment of melanoma thickness has not been studied. The aim of this ...

DeepTSS: multi-branch convolutional neural network for transcription start site identification from CAGE data

Grigoriadis D., Perdikopanis N., Georgakilas G.K., Hatzigeorgiou A.G. (2022)

Background: The widespread usage of Cap Analysis of Gene Expression (CAGE) has led to numerous breakthroughs in understanding the transcription mechanisms. Recent evidence in the literature, however, suggests that CAGE ...

DIANA-LncBase v3: Indexing experimentally supported miRNA targets on non-coding transcripts

Karagkouni D., Paraskevopoulou M.D., Tastsoglou S., Skoufos G., Karavangeli A., Pierros V., Zacharopoulou E., Hatzigeorgiou A.G. (2020)

DIANA-LncBase v3.0 (www.microrna.gr/LncBase) is a reference repository with experimentally supported miRNA targets on non-coding transcripts. Its third version provides approximately half a million entries, corresponding ...

Diana-map: Analyzing mirna from raw ngs data to quantification

Alexiou A., Zisis D., Kavakiotis I., Miliotis M., Koussounadis A., Karagkouni D., Hatzigeorgiou A.G. (2021)

microRNAs (miRNAs) are small non-coding RNAs (~22 nts) that are considered central post-transcriptional regulators of gene expression and key components in many pathological conditions. Next-Generation Sequencing (NGS) ...

DIANA-mirExTra v2.0: Uncovering microRNAs and transcription factors with crucial roles in NGS expression data

Vlachos I.S., Vergoulis T., Paraskevopoulou M.D., Lykokanellos F., Georgakilas G., Georgiou P., Chatzopoulos S., Karagkouni D., Christodoulou F., Dalamagas T., Hatzigeorgiou A.G. (2016)

Differential expression analysis (DEA) is one of the main instruments utilized for revealing molecular mechanisms in pathological and physiological conditions. DIANA-mirExTra v2.0 (http://www.microrna. gr/mirextrav2) ...

DIANA-miRGen v4: Indexing promoters and regulators for more than 1500 microRNAs

Perdikopanis N., Georgakilas G.K., Grigoriadis D., Pierros V., Kavakiotis I., Alexiou P., Hatzigeorgiou A. (2021)

Deregulation of microRNA (miRNA) expression plays a critical role in the transition from a physiological to a pathological state. The accurate miRNA promoter identification in multiple cell types is a fundamental endeavor ...

DIANA-miTED: A microRNA tissue expression database

Kavakiotis I., Alexiou A., Tastsoglou S., Vlachos I.S., Hatzigeorgiou A.G. (2022)

microRNAs (miRNAs) are short (∼23nt) single-stranded non-coding RNAs that act as potent post-transcriptional gene expression regulators. Information about miRNA expression and distribution across cell types and tissues is ...

DIANA-tarbase and DIANA suite tools: Studying experimentally supported microRNA targets

Paraskevopoulou M.D., Vlachos I.S., Hatzigeorgiou A.G. (2016)

microRNAs (miRNAs) are short non-coding RNAs (~22 nts) present in animals, plants, and viruses. They are considered central post-transcriptional regulators of gene expression and are key components in a great number of ...

DINOSARC: Color Features Based on Selective Aggregation of Chromatic Image Components for Wireless Capsule Endoscopy

Vasilakakis M.D., Iakovidis D.K., Spyrou E., Koulaouzidis A. (2018)

Wireless Capsule Endoscopy (WCE) is a noninvasive diagnostic technique enabling the inspection of the whole gastrointestinal (GI) tract by capturing and wirelessly transmitting thousands of color images. Proprietary software ...

Double hit viral parasitism, polymicrobial CNS residency and perturbed proteostasis in Alzheimer's disease: A data driven, in silico analysis of gene expression data

Vavougios G.D., Nday C., Pelidou S.-H., Zarogiannis S.G., Gourgoulianis K.I., Stamoulis G., Doskas T. (2020)

The aim of this study was to determine the interaction of peripheral immunity vs. the CNS in the setting of AD pathogenesis at the transcriptomic level in a data driven manner. For this purpose, publicly available gene ...