Πλοήγηση ανά Θέμα "DNA sequence"

Aberrant methylation of c-myc and c-fos protooncogenes and p53 tumor suppressor gene in myelodysplastic syndromes and acute non-lymphocytic leukemia

Papaggeli, P. C.; Kortsaris, A. C.; Matsouka, P. T. (2003)

Purpose: Aberrant methylation, as an epigenetic phenomenon, may precede and regulate the expression of genes involved in transformation mechanisms that lead to leukemogenesis of hemopoietic cells. The genes involved mostly ...

AGAMEMNON: an Accurate metaGenomics And MEtatranscriptoMics quaNtificatiON analysis suite

Skoufos G., Almodaresi F., Zakeri M., Paulson J.N., Patro R., Hatzigeorgiou A.G., Vlachos I.S. (2022)

We introduce AGAMEMNON (https://github.com/ivlachos/agamemnon) for the acquisition of microbial abundances from shotgun metagenomics and metatranscriptomic samples, single-microbe sequencing experiments, or sequenced host ...

Assessment of the effects of oxamyl on the bacterial community of an agricultural soil exhibiting enhanced biodegradation

Gallego S., Devers-Lamrani M., Rousidou K., Karpouzas D.G., Martin-Laurent F. (2019)

Modern agricultural practices largely rely on pesticides to protect crops against various pests and to ensure high yields. Following their application to crops a large amount of pesticides ends up in soil where they may ...

Characterisation of a ST100 Staphylococcus epidermidis producing an LnuB nucleotidyltransferase: Evidence for interspecies spread of an lnuB-carrying transposon

Papagiannitsis C.C., Sarrou S., Tsilipounidaki K., Malli E., Medvecky M., Hrabak J., Fthenakis G.C., Petinaki E. (2018)

[No abstract available]

Complete exon 2 sequence of the HLA-DPA1*03:01 allele by sequence-based typing

Sarri C.A., Markantoni M., Hadjichristodoulou C., Mamuris Z. (2016)

Detection of mitochondrial transfer RNA (mt-tRNA) gene mutations in patients with idiopathic pulmonary fibrosis and sarcoidosis

Daniil Z., Kotsiou O.S., Grammatikopoulos A., Peletidou S., Gkika H., Malli F., Antoniou K., Vasarmidi E., Mamuris Z., Gourgoulianis K., Zifa E. (2018)

Mitochondrial reactive oxygen species production may lead to tissue injury associated with two respiratory disorders of unknown origin which are shared by common tissue fibrosis, IPF and sarcoidosis. Sequence analysis of ...

Diagnostic value of immunohistochemistry for the detection of the BRAF V600E mutation in colorectal carcinoma

Ioannou M., Papamichali R., Samara M., Paraskeva E., Papacharalambous C., Baxevanidou K., Koukoulis G. (2016)

Purpose: V600E is the most common activating BRAF mutation in colorectal carcinomas (CRCs). It is a crucial biomarker for patient selection and response to targeted therapy with BRAF V600E inhibitors. Previous studies using ...

Dimerization of the AtoC response regulator and modelling of its binding to DNA

Papadopoulos, G.; Grigoroudis, A. I.; Kyriakidis, D. A. (2010)

Bacterial signal transduction systems can be viewed as an entity of multi-sensory and output domains, whereas the functions of response regulators play a pivotal role in the complex network interactions. One crucial property ...

Direct detection of Cardiobacterium hominis in serum from a patient with infective endocarditis by broad-range bacterial PCR

Gatselis, N.; Malli, E.; Papadamou, G.; Petinaki, E.; Dalekos, G. N. (2006)

Bacterial DNA was detected directly to the serum of a patient with endocarditis by broad-range 16S rRNA PCR followed by sequencing and analysis of the results by the BLAST search. Using these methods, Cardiobacterium hominis ...

DNA methylation regulates miR-140-5p and miR-146a expression in osteoarthritis

Papathanasiou I., Trachana V., Mourmoura E., Tsezou A. (2019)

Aims: Previous studies have demonstrated that transcriptional silencing of miRNAs due to DNA hypermethylation is associated with different pathologies. It has also been reported that abnormal expression of miR-140-5p and ...

Do trabecular metal and cancellous titanium implants reduce the risk of late haematogenous infection? An experimental study in rabbits

Komnos G., Banios K., Kolonia K., Poultsides L.A., Petinaki E., Sarrou S., Zintzaras E., Karachalios T. (2021)

Aim: This study evaluated the late resistance to haematogenous contamination by microbial pathogens of implants and bone-implant interface and the development of late clinical infection when cementless components with ...

First-Time Detection of Porcine Reproductive and Respiratory Syndrome Virus and Porcine Circovirus 2 in an Albanian Farrow-to-Finish Herd

Papatsiros V.G., Chaintoutis S.C., Psalla D., Maragkakis G.G., Christodoulopoulos G., Dovas C.I. (2018)

The purpose of this case report is to describe for the first time concurrent porcine reproductive and respiratory syndrome virus (PRRSV) and porcine circovirus 2 (PCV-2) infections in a commercial farrow-to-finish pig farm ...

Genetic diversity and structure of Rhizobium leguminosarum populations associated with clover plants are influenced by local environmental variables

Stefan A., Van Cauwenberghe J., Rosu C.M., Stedel C., Labrou N.E., Flemetakis E., Efrose R.C. (2018)

The identification and conservation of indigenous rhizobia associated with legume plants and their application as biofertilizers is becoming an agricultural worldwide priority. However, little is known about the genetic ...

Genetic variation of eggplant mottled dwarf virus from annual and perennial plant hosts

Pappi P.G., Maliogka V.I., Amoutzias G.D., Katis N.I. (2016)

The genetic diversity of eggplant mottled dwarf virus (EMDV), a member of the family Rhabdoviridae, was studied using isolates collected from different herbaceous and woody plant species and remote geographic areas. Sequences ...

The genus Campylobacter: Detection and isolation methods, species identification & typing techniques

Natsos G., Mouttotou N.K., Ahmad S., Kamran Z., Ioannidis A., Koutoulis K.C. (2019)

Campylobacter is well recognized as the leading cause of bacterial foodborne diarrheal disease worldwide; while, poultry has been identified as a significant cause of campylobacter infection in humans. The C. jejuni has ...

Identification of rearranged sequences of HPV16 DNA in precancerous and cervical cancer cases

Tsakogiannis D., Bletsa M., Kyriakopoulou Z., Dimitriou T.G., Kotsovassilis C., Panotopoulou E., Markoulatos P. (2016)

Integration of HPV16 DNA into the host chromosome is considered to be a crucial step towards genomic instability and cervical cancer development. Aim of the present study was to investigate the presence of HPV16 rearranged ...

Identification of the novel HLA-DRB1*11:192 allele by sequence-based typing in Greece

Sarri C.A., Markantoni M., Hadjichristidoulou C., Mamuris Z. (2016)

Imported Chikungunya fever case in Greece in June 2014 and public health response

Tsiodras S., Pervanidou D., Papadopoulou E., Kavatha D., Baka A., Koliopoulos G., Badieritakis E., Michaelakis A., Gavana E., Patsoula E., Tsimpos I., Gioksari T., Kyriazopoulou E., Vakali A., Pavli A., Maltezou H.C., Georgakopoulou T., Hadjichristodoulou C., Kremastinou J., Papa A. (2016)

We report about the first imported case of Chikungunya fever in Greece in a Greek traveler returning from the Dominican Republic and the associated public health response. We investigated the case and performed focused ...

Isolation and characterisation of a Sphingomonas strain able to degrade the fungicide ortho-phenylphenol

Perruchon C., Patsioura V., Vasileiadis S., Karpouzas D.G. (2016)

BACKGROUND: Ortho-phenylphenol (OPP) is a fungicide used in fruit packaging plants for the control of fungal infestations during storage. Its application leads to the production of large wastewater volumes which according ...

Isolation of a bacterial consortium able to degrade the fungicide thiabendazole: the key role of a Sphingomonas phylotype

Perruchon C., Chatzinotas A., Omirou M., Vasileiadis S., Menkissoglou-Spiroudi U., Karpouzas D.G. (2017)

Thiabendazole (TBZ) is a fungicide used in fruit-packaging plants. Its application leads to the production of wastewaters requiring detoxification. In the absence of efficient treatment methods, biological depuration of ...