Parcourir par sujet "Gene expression"
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The beneficial endophytic fungus fusarium solani strain K alters tomato responses against spider mites to the benefit of the plant
(2018)Beneficial microorganisms are known to promote plant growth and confer resistance to biotic and abiotic stressors. Soil-borne beneficial microbes in particular have shown potential in protecting plants against pathogens ... -
Diagnosis of Induced Resistance State in Tomato Using Artificial Neural Network Models Based on Supervised Self-Organizing Maps and Fluorescence Kinetics
(2022)The aim of this study was to develop three supervised self-organizing map (SOM) models for the automatic recognition of a systemic resistance state in plants after application of a resistance inducer. The pathosystem ... -
Diana-map: Analyzing mirna from raw ngs data to quantification
(2021)microRNAs (miRNAs) are small non-coding RNAs (~22 nts) that are considered central post-transcriptional regulators of gene expression and key components in many pathological conditions. Next-Generation Sequencing (NGS) ... -
Forest classification trees and forest support vector machines algorithms: Demonstration using microarray data
(2010)Classification into multiple classes when the measured variables are outnumbered is a major methodological challenge in -omics studies. Two algorithms that overcome the dimensionality problem are presented: the forest ... -
GRISSOM web based grid portal: Exploiting the power of grid infrastructure for the interpretation and storage of DNA microarray experiments
(2009)DNA Microarrays have dramatically reshaped modern biological research by deriving profiles of genome-wide expression of living organisms, and producing an unprecedented wealth of quantitative data. Given this characteristic, ... -
The human GPCR signal transduction network
(2021)The eukaryotic cell surface G protein-coupled receptors (GPCRs) interact with a wide spectrum of ligands. The intracellular transmission of the extracellular signal is mediated by the selective coupling of GPCRs to G ... -
Identification and expression profiling of rosmarinic acid biosynthetic genes from Satureja khuzistanica under carbon nanotubes and methyl jasmonate elicitation
(2019)Satureja khuzistanica is a medicinal herb endemic to Iran which can serve as a source of rosmarinic acid (RA). In the present study, the effect of different concentrations of methyl jasmonate (MeJA) and multi-walled carbon ... -
Interpreting the Omics 'era' Data
(2013)The analysis and the interpretation of the complex and dynamic biological systems has become a major bottleneck nowadays. The latest high-throughput "omics" approaches, such as genomics, proteomics and transcriptomics and ... -
Lotus SHAGGY-like kinase 1 is required to suppress nodulation in Lotus japonicus
(2019)Glycogen synthase kinase/SHAGGY-like kinases (SKs) are a highly conserved family of signaling proteins that participate in many developmental, cell-differentiation, and metabolic signaling pathways in plants and animals. ... -
METRADISC-XL: A program for meta-analysis of multidimensional ranked discovery oriented datasets including microarrays
(2012)A comprehensive software for performing meta-analysis of ranked discovery oriented datasets, such as those derived from microarrays or other high throughput technologies, and for testing between-study heterogeneity for ... -
Molecular cloning of four glutathione peroxidase (GPx) homologs and expression analysis during stress exposure of the marine teleost Sparus aurata
(2014)Glutathione peroxidase (GPx; EC 1.11.1.9) is an important family of enzymes that protects organisms from oxidative damage. Four full-length GPx cDNAs were cloned and characterized by rapid amplification of cDNA ends ... -
Pathway analysis using xgboost classification in biomedical data
(2018)Given the fact that our biological existence is rooted in a complex system within our cells with thousands of interactions among genes and metabolites, research community in biological and medical fields have shifted their ... -
PKC and Ras differentially regulate gene expression of the dopaminergic marker TH and noradrenergic marker DBH
(2007)We have successfully established for the first time in the literature cell lines from human fetal cells derived from the amniotic fluid (AF) and have documented that these cells may progress and stably express many of the ... -
The polyphenolic composition of extracts derived from different Greek extra virgin olive oils is correlated with their antioxidant potency
(2019)Olive oil possesses a predominant role in the diet of countries around the Mediterranean basin, whereas it is a known constituent of several sectors of human culture. The polyphenolic composition of olive oil seems to be ... -
Projection based clustering of gene expression data
(2010)The microarray DNA technologies have given researchers the ability to examine, discover and monitor thousands of genes in a single experiment. Nonetheless, the tremendous amount of data that can be obtained from microarray ... -
Single-cell regulatory network inference and clustering from high-dimensional sequencing data
(2019)We are in the big data era which has affected several domains including biomedicine and healthcare. This revolution driven by the explosion of biomedical data offers the potential for better understanding of biology and ... -
TarMiner: Automatic extraction of miRNA targets from literature
(2015)MicroRNAs (miRNAs) are small RNA molecules that tar-get particular genes and prohibit their expression. Since many important diseases are related to the expression or non-expression of particular genes, knowing the miRNAs ... -
Transcriptional over-expression of chloride intracellular channels 3 and 4 in malignant pleural mesothelioma
(2015)Background Chloride Intracellular Channels (CLICs) are contributing to the regulation of multiple cellular functions. CLICs have been found over-expressed in several malignancies, and therefore they are currently considered ...