• Building in-silico pathway SBML models from heterogeneous sources 

      Kanaris, I.; Moutselos, K.; Chatziioannou, A.; Maglogiannis, I.; Kolisis, F. N. (2008)
      The recent revolutionary developments concerning the high throughput (-omics) measuring techniques in life sciences is expediting the way for the development of in silico models envisioning the Systems biology perspective ...
    • The challenges of interpreting phosphoproteomics data: A critical view through the bioinformatics lens 

      Vlastaridis P., Oliver S.G., Van de Peer Y., Amoutzias G.D. (2016)
      During the last decade, there has been great progress in high-throughput (HTP) phosphoproteomics and hundreds or even thousands of phosphorylation sites (p-sites) can now be detected in a single experiment. This success ...
    • Diana-map: Analyzing mirna from raw ngs data to quantification 

      Alexiou A., Zisis D., Kavakiotis I., Miliotis M., Koussounadis A., Karagkouni D., Hatzigeorgiou A.G. (2021)
      microRNAs (miRNAs) are small non-coding RNAs (~22 nts) that are considered central post-transcriptional regulators of gene expression and key components in many pathological conditions. Next-Generation Sequencing (NGS) ...
    • Online resources for miRNA analysis 

      Vlachos, I. S.; Hatzigeorgiou, A. G. (2013)
      Objective: This review aims to provide a brief introduction to each major category of available tools and algorithms for microRNA (miRNA) research, as well as to present some of the most widely used or promising representative ...